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| author | sillylaird <sillyfanboy@gmail.com> | 2026-09-03 00:33:59 +0000 |
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| committer | sillylaird <sillyfanboy@gmail.com> | 2026-09-03 00:33:59 +0000 |
| commit | 898b52edcb47bcb3e9d6106e74ca73e74ea01e70 (patch) | |
| tree | 85c6ee5ad58b860144551184d4cf86b560c62b91 /.agents/skills/zotero-obsidian-bridge/references/WORKFLOW.md | |
| download | www-main.tar.gz www-main.zip | |
Diffstat (limited to '.agents/skills/zotero-obsidian-bridge/references/WORKFLOW.md')
| -rw-r--r-- | .agents/skills/zotero-obsidian-bridge/references/WORKFLOW.md | 83 |
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diff --git a/.agents/skills/zotero-obsidian-bridge/references/WORKFLOW.md b/.agents/skills/zotero-obsidian-bridge/references/WORKFLOW.md new file mode 100644 index 0000000..605a408 --- /dev/null +++ b/.agents/skills/zotero-obsidian-bridge/references/WORKFLOW.md @@ -0,0 +1,83 @@ +# Zotero -> Obsidian Workflow + +## 1. Resolve the project + +1. Run the Obsidian project-memory detect flow. +2. If the repo is bound, use its `Research/{project-slug}/` vault root. +3. If not bound but clearly a research repo, bootstrap first. + +## 2. Read from Zotero + +Preferred read path per paper: +1. `zotero_get_item_metadata` +2. `zotero_get_item_fulltext` +3. `zotero_get_annotations` +4. `zotero_get_notes` + +Use metadata + abstract as the minimum fallback when PDF full text is unavailable. +If the MCP transport path is broken but a local `zotero-mcp` source checkout is available, use the local Python fallback to call the same metadata/fulltext functions instead of aborting. +Treat some Zotero `webpage` items as valid literature entries when they still expose meaningful metadata or fulltext. + +## 3. Create/update the canonical paper note + +Canonical destination: +- `Papers/{normalized-title-or-citekey}.md` + +Update instead of duplicating when the note already exists. + +## 4. Detailed reading note requirements + +Each durable paper note should contain: +- claim +- research question / problem +- method +- evidence +- strengths +- limitation +- direct relevance to repo +- links to related papers and the best matching `Knowledge/` notes + +## 5. Synthesize the stable literature knowledge + +After a batch import, prefer agent-first synthesis into `Knowledge/`: +1. update `Knowledge/Literature-Overview.md` when the batch yields a stable overview +2. update `Knowledge/Method-Families.md` when method clusters are clear +3. update `Knowledge/Research-Gaps.md` when open problems or tensions are stable enough to keep +4. if the source is a named Zotero collection, update a durable inventory note that records: + - collection size, + - triage buckets, + - collection item -> canonical note mapping, + - current coverage such as `16 / 16` + +## 6. Refresh the default literature canvas + +After batch note creation or major note updates: +1. rebuild `Maps/literature.canvas` +2. ensure core paper notes have meaningful wikilinks into `Knowledge/` +3. keep the graph lightweight and project-facing +4. prefer semantic filtering and edge thinning over dense all-to-all paper links +5. prefer `paper + claim + method + gap` argument-map structure for the main graph +6. add `Maps/literature-main.canvas` only when a second lightweight display graph is genuinely useful + +## 7. Push downstream only when justified + +- during Zotero ingestion, default to `Papers/` plus `Knowledge/` +- update `Writing/` only when the user asks for a review, comparison, or draft-facing synthesis +- treat `Experiments/` and `Results/` as later project workflows, not default Zotero-import targets + +## 8. Verify before closing + +After batch ingestion or schema refactors: +1. verify every expected paper has a canonical note +2. verify `zotero_key` coverage matches the imported collection +3. verify all covered notes use the same canonical section schema +4. update the project `Daily/` note and project memory with what changed + +Recommended verification command: + +```bash +python3 "${CLAUDE_PLUGIN_ROOT}/skills/zotero-obsidian-bridge/scripts/verify_paper_notes.py" \ + --papers-dir "/absolute/path/to/Papers" \ + --expected-zotero-keys "KEY1,KEY2,KEY3" \ + --inventory-note "/absolute/path/to/Knowledge/Zotero-Collection-collection-slug-Inventory.md" +``` |
